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How do you manage these symptoms while your gut biome rebuilds itself? Antibiotics target all bacteria — the good ones and the bad. Back in the day, doctors used to think that a healthy body was a sterile body, and that our immune systems were constantly fighting the microbes we came in contact with. Once antibiotics were invented, millions of lives were saved as people were protected from bacterial infections. Colonies of beneficial bacteria in your digestive tract help you digest and absorb your food, fight off germs that make you sick and even make a large portion of your serotonin, which helps keep your moods level.
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Since antibiotics are trying to kill bacteria in your body, they also kill bacteria in your intestines that keep your digestive system in balance. The result? When you need to take antibiotics to treat a bacterial infection, the last thing you want to do is add more symptoms into the mix. Cleveland Clinic is a non-profit academic medical center. Advertising on our site helps support our mission. We do not endorse non-Cleveland Clinic products or services. Yet many people suffer from an upset stomach when taking antibiotics. Diarrhea is a common concern. So are abdominal cramping and gas.